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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 39ChIP-seq
  • 33DNase-seq
  • 6Hi-C
  • 5RRBS
  • 1ATAC-seq
  • 1WGBS
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 39DNA binding
  • 35DNA accessibility
  • 63D chromatin structure
  • 6DNA methylation
  • 1Transcription
Target of assay
  • 33histone
  • 33histone modification
  • 20broad histone mark
  • 13narrow histone mark
  • 6control
Date released
  • 43June, 2019
  • 26August, 2017
  • 7May, 2019
  • 6July, 2019
  • 2March, 2020
  • 2May, 2022
  • 1January, 2018
Available data
  • 68bigWig
  • 60bed narrowPeak
  • 57bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1txt
Organism
  • 87Homo sapiens
Biosample type
  • 75tissue
  • 12primary cell
Organ
  • 617liver
  • 529pancreas
  • 368epithelium
  • 330kidney
  • 260brain
  • 225heart
  • 206connective tissue
  • 168vasculature
  • 162blood vessel
  • 115limb
  • 101bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 56eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 87AMP
Genome assembly (visualization)
  • 67hg19
  • 47GRCh38
Lab
  • 87AMP-T2D consortium
Audit category:
  • 9inconsistent ontology term
  • 1audit script error
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  • tsv
BIOSAMPLE
ASSAY

87 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue224111
muscle of leg7131
muscle of arm17
gastrocnemius medialis4
psoas muscle2
primary cell
skeletal muscle satellite cell8
skeletal muscle cell211
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