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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 218ChIP-seq
  • 150ATAC-seq
  • 71total RNA-seq
  • 45WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 8DNase-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 1CRISPR genome editing followed by sgRNA sequencing
Assay category
  • 218DNA binding
  • 171DNA accessibility
  • 71Transcription
  • 47DNA methylation
  • 93D chromatin structure
Target of assay
  • 151histone
  • 151histone modification
  • 78broad histone mark
  • 73narrow histone mark
  • 53control
  • 19transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 104May, 2022
  • 99August, 2017
  • 56February, 2023
  • 51October, 2018
  • 46September, 2018
  • 35November, 2019
  • 21May, 2021
  • 19September, 2020
  • 18October, 2019
  • 11September, 2017
  • 10November, 2020
  • 8January, 2021
  • 8March, 2020
  • 7August, 2020
  • 7November, 2018
  • 5March, 2019
  • 5October, 2017
  • 4July, 2018
  • 4June, 2019
  • 3August, 2021
  • 3October, 2022
  • 2July, 2019
  • 2May, 2019
  • 1August, 2022
Available data
  • 689bam
  • 623bigWig
  • 471fastq
  • tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 521Homo sapiens
Biosample type
  • 238primary cell
  • 230tissue
  • 58cell line
  • 3in vitro differentiated cells
Organ
  • 617liver
  • 529pancreas
  • 368epithelium
  • 330kidney
  • 260brain
  • 225heart
  • 206connective tissue
  • 168vasculature
  • 162blood vessel
  • 115limb
  • 101bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 56eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 351AMP
  • 146HPAP
  • 32T1D
Genome assembly (visualization)
  • 250hg19
  • 229GRCh38
Lab
  • 315AMP-T2D consortium
  • 146Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 42inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

529 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell133542251
pancreatic beta cell132311161
pancreatic endocrine cell23
pancreatic acinar cell891
pancreatic ductal cell134
tissue
islet of Langerhans505717743111
body of pancreas35424
pancreas161241211
endocrine pancreas16
cell line
EndoC_BH115186121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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