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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
Assay category
  • 102DNA binding
  • 58DNA accessibility
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 14February, 2021
  • 7July, 2019
  • 7June, 2019
  • 6November, 2017
  • 2March, 2020
Available data
  • 185bam
  • 155bigWig
  • 133bed narrowPeak
  • 83bigBed narrowPeak
  • tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 168Homo sapiens
Biosample type
  • 119tissue
  • 35primary cell
  • 14cell line
Organ
  • 617liver
  • 529pancreas
  • 368epithelium
  • 330kidney
  • 260brain
  • 225heart
  • 206connective tissue
  • 168vasculature
  • 162blood vessel
  • 115limb
  • 101bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 56eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 168AMP
Genome assembly (visualization)
  • 133GRCh38
  • 107hg19
Lab
  • 168AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

168 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
FAIRE-seq
RRBS
tissue
coronary artery5362
tibial artery2312
ascending aorta161
thoracic aorta161
aorta1312
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
cell line
smooth muscle cell of the coronary artery68
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