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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 212total RNA-seq
  • 158single cell RNA-seq
  • 85RNA microarray
  • 10MeRIP-seq
  • 7ChIP-seq
  • 5STARR-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snATAC-seq
Assay category
  • 374Transcription
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 6control
  • 6histone
  • 6histone modification
  • 5nucleotide modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 97February, 2021
  • 91February, 2023
  • 63August, 2021
  • 60May, 2022
  • 56September, 2020
  • 47September, 2023
  • 14October, 2019
  • 10April, 2020
  • 10November, 2020
  • 9May, 2021
  • 7August, 2017
  • 4July, 2018
  • 4March, 2023
  • 4May, 2023
  • 2March, 2020
  • 2May, 2020
  • 1December, 2019
  • 1November, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • tsv
  • 1342bam
  • 1337bigWig
  • 373fastq
  • 157txt
  • 52zippedFastqFolder
  • 8csv
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 2bed bed3+
Organism
  • 469Homo sapiens
Biosample type
  • 274tissue
  • 184primary cell
  • 15cell line
  • 9in vitro differentiated cells
  • 2stem cell
Organ
  • 110kidney
  • 89pancreas
  • 88bone element
  • 60epithelium
  • 23liver
  • 14eye
  • 10lung
  • 6connective tissue
  • 4skeleton
  • 2adipose tissue
  • 1heart
  • 1musculature of body
Project
  • 239AMP
  • 177HPAP
  • 47KPMP
  • 10LungMap
  • 7T1D
  • 4community
Genome assembly (visualization)
  • 9hg19
  • 7GRCh38
Lab
  • 177Klaus Kaestner, Upenn
  • 132AMP-T2D consortium
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 19Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 5Bing Ren, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 93inconsistent ontology term
Audit category:
  • 1inconsistent assembly
files.file_type!
  • tsv
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

484 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
MeRIP-seq
ChIP-seq
STARR-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
kidney4959
bone element84
islet of Langerhans314
liver201
lung91
primary cell
Langerhans cell85
pancreatic alpha cell42
exocrine cell39
pancreatic beta cell11
CD8-positive, alpha-beta T cell2
cell line
EndoC_BH161
EndoC-BH111
HEK293T2
HepG22
MIN61
in vitro differentiated cells
embryonic stem cell5
immature adipocyte2
adipocyte1
preadipocyte1
stem cell
SB Ad3.111
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