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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1864ChIP-seq
  • 517ATAC-seq
  • 212DNase-seq
  • 83snATAC-seq
  • 69WGBS
  • 34Hi-C
  • 26pCHi-C
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1864DNA binding
  • 817DNA accessibility
  • 91DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 1011histone modification
  • 1010histone
  • 514transcription factor
  • 512narrow histone mark
  • 497broad histone mark
  • 334control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 315August, 2017
  • 284October, 2019
  • 218June, 2019
  • 217May, 2021
  • 150May, 2020
  • 140May, 2022
  • 133August, 2021
  • 120May, 2019
  • 98February, 2023
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 59February, 2021
  • 46September, 2018
  • 43July, 2019
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 25January, 2019
  • 24February, 2018
  • 23October, 2017
  • 17March, 2020
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 2050bam
  • 1832bigWig
  • 1811bed narrowPeak
  • 1036bigBed narrowPeak
  • 985fastq
  • 391tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2847Homo sapiens
Biosample type
  • 1427tissue
  • 634primary cell
  • 528cell line
  • 254in vitro differentiated cells
  • 4stem cell
Organ
  • 594liver
  • 440pancreas
  • 308epithelium
  • 260brain
  • 224heart
  • 220kidney
  • 200connective tissue
  • 168vasculature
  • 162blood vessel
  • 115limb
  • 88adipose tissue
  • 86musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 9lung
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 2557AMP
  • 141HPAP
  • 139T1D
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1802hg19
  • 1720GRCh38
  • 5hg18
Lab
  • 2292AMP-T2D consortium
  • 228Kyle Gaulton, UCSD
  • 141Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 110inconsistent ontology term
  • 33audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

2847 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
HiChIP
DNAme array
whole genome sequencing assay
tissue
liver145202311
islet of Langerhans7167173411
kidney2775136111
heart left ventricle3523411
body of pancreas35442
primary cell
monocyte851511
pancreatic alpha cell1335251
pancreatic beta cell1323161
Langerhans cell48
CD8-positive, alpha-beta T cell3321
cell line
HepG237811211
GM12878601
EndoC_BH115181232
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte67811
embryonic stem cell406
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
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