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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 755ChIP-seq
  • 181ATAC-seq
  • 49DNase-seq
  • 22total RNA-seq
  • 21pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 10MeRIP-seq
  • 4FAIRE-seq
  • 4STARR-seq
  • 4single cell RNA-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2WGBS
  • 1DNAme array
Assay category
  • 755DNA binding
  • 246DNA accessibility
  • 26Transcription
  • 22DNA methylation
  • 193D chromatin structure
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 74control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 112October, 2019
  • 102May, 2020
  • 90May, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 56August, 2017
  • 50August, 2021
  • 41February, 2023
  • 28December, 2018
  • 24November, 2019
  • 22July, 2019
  • 16January, 2019
  • 14May, 2019
  • 13March, 2020
  • 11February, 2021
  • 10November, 2020
  • 8October, 2018
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1March, 2023
  • 1September, 2018
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1108Homo sapiens
Biosample type
  • 437cell line
  • 287primary cell
  • 264tissue
  • 117in vitro differentiated cells
  • 3stem cell
Organ
  • 410liver
  • 115pancreas
  • 85epithelium
  • 70brain
  • 58blood
  • 58bodily fluid
  • 47connective tissue
  • 43vasculature
  • 42kidney
  • 38blood vessel
  • 24heart
  • 19vein
  • 15musculature of body
  • 9bone element
  • 8skeleton
  • 7adipose tissue
  • 7artery
  • 6eye
  • 5limb
  • 3embryo
  • 1bone marrow
  • 1pericardium
  • 1pituitary gland
  • 1thymus
Project
  • 1009AMP
  • 95T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 863hg19
  • 711GRCh38
Lab
  • 961AMP-T2D consortium
  • 109Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 65inconsistent ontology term
  • 28inconsistent control
  • 4audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • tsv
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1108 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
MeRIP-seq
FAIRE-seq
STARR-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
WGBS
DNAme array
cell line
HepG233511121
GM1287856
Panc11111
EndoC_BH12163
RCC 7860 HIF1a re-expression4
primary cell
monocyte472111
naive thymus-derived CD4-positive, alpha-beta T cell22211
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast1521
tissue
islet of Langerhans2236172134
liver42111
brain11121
heart5411
kidney12141
in vitro differentiated cells
neural progenitor cell2110
embryonic stem cell1155
adipocyte78111
hepatocyte15
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC3
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