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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 181ChIP-seq
  • 92ATAC-seq
  • 27DNase-seq
  • 22total RNA-seq
  • 9Hi-C
  • 5pCHi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 4single cell RNA-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 1DNAme array
Assay category
  • 181DNA binding
  • 127DNA accessibility
  • 26Transcription
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 76May, 2021
  • 47May, 2020
  • 47October, 2019
  • 40August, 2021
  • 35February, 2023
  • 33August, 2017
  • 30June, 2019
  • 7March, 2020
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3December, 2017
  • 3February, 2021
  • 3October, 2022
  • 2January, 2021
  • 2July, 2019
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 483bam
  • 467bigWig
  • tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 355Homo sapiens
Biosample type
  • 156tissue
  • 129primary cell
  • 70in vitro differentiated cells
Organ
  • 61pancreas
  • 49brain
  • 36connective tissue
  • 12epithelium
  • 12liver
  • 9heart
  • 9kidney
  • 8bone element
  • 8skeleton
  • 7adipose tissue
  • 2blood
  • 2bodily fluid
  • 2eye
  • 2musculature of body
  • 1blood vessel
  • 1pituitary gland
  • 1vasculature
  • 1vein
Project
  • 277AMP
  • 74T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 255hg19
  • 189GRCh38
Lab
  • 246AMP-T2D consortium
  • 90Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 14inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

355 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
pCHi-C
snATAC-seq
MeRIP-seq
single cell RNA-seq
FAIRE-seq
Capture-C
DNAme array
tissue
islet of Langerhans221717224
brain612
liver611
heart411
kidney121
primary cell
monocyte47211
mesenchymal stem cell7
hepatocyte4
naive thymus-derived CD4-positive, alpha-beta T cell211
CD8-positive, alpha-beta T cell21
in vitro differentiated cells
neural progenitor cell2110
embryonic stem cell1145
adipocyte7411
immature adipocyte11
osteoblast11
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