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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 574ChIP-seq
  • 89ATAC-seq
  • 22DNase-seq
  • 19RRBS
  • 16pCHi-C
  • 10Hi-C
  • 7snATAC-seq
  • 6MeRIP-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2WGBS
  • 1FAIRE-seq
Assay category
  • 574DNA binding
  • 119DNA accessibility
  • 21DNA methylation
  • 103D chromatin structure
Target of assay
  • 387transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • 57control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 65October, 2019
  • 62November, 2018
  • 59December, 2017
  • 55May, 2020
  • 32June, 2019
  • 28December, 2018
  • 23August, 2017
  • 23November, 2019
  • 20July, 2019
  • 16January, 2019
  • 14May, 2019
  • 14May, 2021
  • 10August, 2021
  • 8February, 2021
  • 7October, 2018
  • 6February, 2023
  • 6March, 2020
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 753Homo sapiens
Biosample type
  • 437cell line
  • 158primary cell
  • 108tissue
  • 47in vitro differentiated cells
  • 3stem cell
Organ
  • 398liver
  • 73epithelium
  • 56blood
  • 56bodily fluid
  • 54pancreas
  • 42vasculature
  • 37blood vessel
  • 33kidney
  • 21brain
  • 18vein
  • 15heart
  • 13musculature of body
  • 11connective tissue
  • 7artery
  • 5limb
  • 4eye
  • 3embryo
  • 1bone element
  • 1bone marrow
  • 1pericardium
  • 1thymus
Project
  • 732AMP
  • 21T1D
Genome assembly (visualization)
  • 608hg19
  • 522GRCh38
Lab
  • 715AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 51inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

753 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RRBS
pCHi-C
Hi-C
snATAC-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
WGBS
FAIRE-seq
cell line
HepG233511121
GM1287856
Panc11111
EndoC_BH12163
RCC 7860 HIF1a re-expression4
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
endothelial cell of umbilical vein1611
skeletal muscle myoblast1521
macrophage11
tissue
liver361
islet of Langerhans1911
body of pancreas7
thoracic aorta7
brain51
in vitro differentiated cells
hepatocyte15
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
cardiomyocytes (cardiac muscle cell)112
Posterior foregut3
stem cell
hESC3
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