Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 3018target gene predictions
  • 1709candidate regulatory elements
  • 944chromatin state
  • 397accessible chromatin
  • 331differential activity
  • 144eQTL
  • 141variant allelic effects
  • 93binding sites
  • 45gene expression
  • 13caQTL
  • 7sQTL
  • 3meQTL
  • 3pQTL
  • 2Fine-mapped variants
  • 2other
  • 2variant to gene
Date released
  • 2499September, 2022
  • 1984July, 2026
  • 843February, 2021
  • 320May, 2026
  • 257February, 2024
  • 155May, 2020
  • 155May, 2021
  • 111November, 2021
  • 102January, 2022
  • 101October, 2022
  • 49March, 2020
  • 38May, 2024
  • 35August, 2017
  • 35May, 2022
  • 32August, 2021
  • 28January, 2021
  • 19April, 2020
  • 17February, 2020
  • 13March, 2023
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 7January, 2020
  • 6February, 2023
  • 5October, 2019
  • 5September, 2023
  • 4March, 2026
  • 2January, 2025
  • 2November, 2019
  • 1August, 2020
  • 1August, 2022
  • 1February, 2025
Available data
  • 5535bed bed3+
  • tsv
  • 869bed bed9
  • 112txt
  • 90bigWig
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 7bigBed narrowPeak
  • 1bam
Organism
  • 6807Homo sapiens
Collection Tags
  • 2499EpiMap
  • 1458ENCODE-rE2G
  • 942ENCODE
  • 393HDMA
  • 386DGA
  • 320pyxis
  • 1744DN
  • 160T1D
  • 152AMP
  • 148T2DKP
  • 133CATlas
  • 101T2D
  • 101eQTLCatalogue
  • 89 T2DKP
  • 60BLUEPRINT
  • 26FNIH_projects-heart
  • 21CMDGA
  • 12FNIH_projects-liver
Biosample type
  • 2795tissue
  • 2599primary cell
  • 1216cell line
  • 238in vitro differentiated cells
  • 4stem cell
Organ
  • 738brain
  • 667blood
  • 447kidney
  • 422heart
  • 418lung
  • 355epithelium
  • 323connective tissue
  • 321intestine
  • 321musculature of body
  • 254skin of body
  • 204large intestine
  • 203limb
  • 170embryo
  • 170pancreas
  • 164liver
  • 158extraembryonic component
  • 153bodily fluid
  • 147vasculature
  • 137blood vessel
  • 129stomach
  • 112adipose tissue
  • 111muscle organ
  • 94adrenal gland
  • 94small intestine
  • 92eye
  • 89thymus
  • 88placenta
  • 83mammary gland
  • 83uterus
  • 74bone element
  • 69ureter
  • 66prostate gland
  • 60__MARKER__
  • 59spleen
  • 54gonad
  • 51artery
  • 51penis
  • 44thyroid gland
  • 42esophagus
  • 41spinal cord
  • 40lymph node
  • 29ovary
  • 25testis
  • 20lymphoid tissue
  • 19mouth
  • 19vein
  • 16nerve
  • 16skeleton
  • 13breast
  • 11bronchus
  • 11pituitary gland
  • 11urinary bladder
  • 11vagina
  • 10lymphatic vessel
  • 10tongue
  • 7bone marrow
  • 3nose
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 6672AMP
  • 111ENCODE
  • 32T1D
  • 19LungMap
  • 15community
  • 5ITG
Genome assembly (visualization)
  • 4369hg19
  • 3293GRCh38
  • 4hg18
files.file_type!
  • tsv
software_used.software.name!
  • macs
BIOSAMPLE
TYPE

6854 results

search-icontable-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
differential activity
eQTL
variant allelic effects
binding sites
gene expression
caQTL
sQTL
meQTL
pQTL
Fine-mapped variants
other
variant to gene
tissue
stomach4240191
heart383721121
head of caudate nucleus86
muscle of arm3333161
lung3133161
primary cell
fibroblast2832410261
T-cell644
common myeloid progenitor, CD34-positive262713
CD4-positive, alpha-beta T cell5283
endothelial cell1738251212
cell line
A5493321181
HeLa-S359531
K56230771
H1-hESC39111
MCF-713951
in vitro differentiated cells
hematopoietic multipotent progenitor cell221910
adipocyte746
neural progenitor cell654
endodermal cell442
mesenchymal stem cell432
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego