Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
148
total RNA-seq
109
ATAC-seq
97
single cell RNA-seq
82
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
245
Transcription
191
DNA accessibility
154
DNA binding
1
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
72
May, 2022
71
August, 2021
62
February, 2023
45
May, 2020
40
September, 2020
39
February, 2021
19
April, 2020
16
January, 2021
14
May, 2023
Available data
220
bigWig
204
bam
196
bed narrowPeak
124
fastq
96
tsv
84
tagAlign
73
zippedFastqFolder
64
xls
txt
2
bed bed3+
1
hic
Organism
612
Homo sapiens
Biosample type
411
primary cell
150
tissue
47
in vitro differentiated cells
5
cell line
Organ
197
pancreas
epithelium
85
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
236
T1D
186
AMP
172
HPAP
19
LungMap
Genome assembly (visualization)
255
GRCh38
239
hg19
Lab
3451
AMP-T2D consortium
337
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
85
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
5
inconsistent ontology term
files.file_type!
txt
organ_slims!
epithelium
BIOSAMPLE
ASSAY
613 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
monocyte
84
53
1
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
+ See 33 more…
tissue
kidney
75
3
6
1
islet of Langerhans
5
29
6
lung
9
10
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
See all biosamples
Download