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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
64
total RNA-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
94
DNA binding
64
Transcription
52
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
175
May, 2021
May, 2020
23
February, 2023
18
May, 2022
16
January, 2021
Available data
125
bigWig
119
bam
82
bed narrowPeak
51
tsv
44
tagAlign
24
fastq
txt
2
bed bed3+
Organism
232
Homo sapiens
Biosample type
144
primary cell
46
tissue
37
in vitro differentiated cells
5
cell line
Organ
45
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
151
T1D
81
AMP
Genome assembly (visualization)
143
hg19
95
GRCh38
Lab
3084
AMP-T2D consortium
324
Klaus Kaestner, Upenn
232
Kyle Gaulton, UCSD
85
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
txt
month_released!
January, 2019
May, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
232 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
44
51
1
CD8-positive, alpha-beta T cell
23
2
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
5
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
27
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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