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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
436
ChIP-seq
184
total RNA-seq
21
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
DNase-seq
1
WGBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
436
DNA binding
188
Transcription
22
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
283
transcription factor
95
control
66
recombinant protein
55
histone
55
histone modification
40
narrow histone mark
37
RNA binding protein
17
chromatin remodeller
15
broad histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
August, 2017
November, 2018
48
December, 2017
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
576
bam
528
bigWig
369
fastq
353
bed narrowPeak
286
bigBed narrowPeak
169
tsv
62
tagAlign
59
bed broadPeak
59
bigBed broadPeak
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
vcf
Organism
656
Homo sapiens
Biosample type
355
cell line
300
tissue
1
primary cell
Organ
745
pancreas
684
liver
558
connective tissue
epithelium
433
adipose tissue
393
heart
292
kidney
284
brain
236
vasculature
230
blood vessel
141
artery
122
limb
71
bone element
69
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
spleen
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
656
AMP
Genome assembly (visualization)
530
hg19
436
GRCh38
Lab
585
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
files.file_type!
txt
month_released!
August, 2017
November, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
656 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
DNase-seq
WGBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
333
14
1
2
2
2
1
tissue
liver
93
167
20
1
1
1
1
right lobe of liver
10
3
2
1
primary cell
hepatic stellate cell
1
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