Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1355target gene predictions
  • 944chromatin state
  • 902accessible chromatin
  • 872candidate regulatory elements
  • 487gene expression
  • 186eQTL
  • 172differential activity
  • 140variant allelic effects
  • 137histone modifications
  • 99binding sites
  • 84Fine-mapped variants
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
Date released
  • 2639February, 2025
  • 2511September, 2022
  • February, 2021
  • 389May, 2021
  • 378February, 2024
  • 333November, 2021
  • 289June, 2020
  • 286September, 2023
  • 155May, 2020
  • 128March, 2020
  • 106January, 2022
  • 103August, 2021
  • 101October, 2022
  • 89January, 2020
  • 70March, 2023
  • 64February, 2020
  • 56January, 2021
  • 49May, 2022
  • 44November, 2022
  • 40May, 2024
  • 38March, 2025
  • 35August, 2017
  • 32February, 2023
  • 30March, 2024
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 3672bed bed3+
  • 3398tsv
  • 869bed bed9
  • 532bigWig
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • txt
  • 13bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 8005Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 513AMP
  • 457DGA
  • 415T1D
  • 405T2DKP
  • 290ChIP-Atlas
  • 281KPMP
  • 219BLUEPRINT
  • 1744DN
  • 152 T2DKP
  • 149GTEx
  • 128ENCODE
  • 111T2D
  • 101eQTLCatalogue
  • 100CMDGA
  • 67HPAP
  • 43STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 4682tissue
  • 2036primary cell
  • 1048cell line
  • 281in vitro differentiated cells
  • 4stem cell
Organ
  • 2864vasculature
  • 2812blood vessel
  • 2785bodily fluid
  • 2778blood
  • 2651vein
  • 750epithelium
  • 452kidney
  • 370connective tissue
  • 357brain
  • 288musculature of body
  • 246pancreas
  • 241lung
  • 218intestine
  • 209heart
  • 186limb
  • 162embryo
  • 137liver
  • 136skin of body
  • 128large intestine
  • 113extraembryonic component
  • 92eye
  • 90stomach
  • 76adipose tissue
  • 73uterus
  • 66small intestine
  • 64artery
  • 59adrenal gland
  • 59mammary gland
  • 55placenta
  • 53bone element
  • 49prostate gland
  • 46ureter
  • 38gonad
  • 38thymus
  • 36penis
  • 35esophagus
  • 35lymph node
  • 34spinal cord
  • 24spleen
  • 22nerve
  • 19lymphatic vessel
  • 19lymphoid tissue
  • 19ovary
  • 19thyroid gland
  • 18testis
  • 15mouth
  • 12pituitary gland
  • 11bronchus
  • 10breast
  • 9skeleton
  • 9urinary bladder
  • 8bone marrow
  • 8tongue
  • 8vagina
  • 4nose
  • 1pericardium
  • 1trachea
Project
  • 7342AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 4590hg19
  • 1898GRCh38
  • 4hg18
files.file_type!
  • txt
month_released!
  • February, 2021
BIOSAMPLE
TYPE

8053 results

search-icontable-tab-icon
Clear Filters
pQTL
target gene predictions
chromatin state
accessible chromatin
candidate regulatory elements
gene expression
eQTL
differential activity
variant allelic effects
histone modifications
binding sites
Fine-mapped variants
caQTL
sQTL
hQTL
variant to gene
meQTL
other
tissue
whole blood26351
heart202151922
stomach211931911
brain1618216121
kidney1416101411
primary cell
monocyte21815484121
CD8-positive, alpha-beta T cell514230
common myeloid progenitor, CD34-positive141313
B cell1086122
macrophage312319311
cell line
HeLa-S355331
A54919181181
H1-hESC3911181
K562237161
EndoC_BH118831
in vitro differentiated cells
neural progenitor cell54104714
hematopoietic multipotent progenitor cell10101101
adipocyte6642
embryonic stem cell156
extended pluripotent stem (EPS) cells9
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego