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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
76
ATAC-seq
57
ChIP-seq
25
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
4
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
123
Transcription
82
DNA accessibility
57
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
39
transcription factor
20
histone
histone modification
16
control
11
narrow histone mark
9
broad histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
560
February, 2021
318
November, 2017
314
May, 2020
258
May, 2021
242
August, 2021
212
August, 2017
199
June, 2019
194
February, 2023
193
May, 2022
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
123
tsv
117
bed narrowPeak
67
bam
64
xls
58
bigWig
txt
35
fastq
30
bigBed narrowPeak
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
276
Homo sapiens
Biosample type
179
tissue
69
cell line
28
in vitro differentiated cells
1
primary cell
Organ
92
heart
73
kidney
30
liver
27
blood
27
bodily fluid
8
embryo
7
spleen
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
3
epithelium
2
artery
1
adipose tissue
Project
277
AMP
Genome assembly (visualization)
119
GRCh38
72
hg19
Lab
169
AMP-T2D consortium
71
Katalin Susztak, Upenn
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
inconsistent control
files.file_type!
txt
organ_slims!
bone element
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
277 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
cell line
HepG2
15
9
2
2
1
GM12878
27
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
10
7
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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