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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
16
small RNA-seq
14
RRBS
11
ATAC-seq
11
WGBS
6
ChIP-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
61
Transcription
25
DNA methylation
13
DNA accessibility
6
DNA binding
4
3D chromatin structure
Target of assay
9
control
Date released
626
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
314
October, 2019
262
August, 2021
198
February, 2023
192
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
88
bam
85
bigWig
61
tsv
21
bed bedMethyl
21
bigBed bedMethyl
12
bed narrowPeak
11
fastq
7
bigBed narrowPeak
6
bed bed3+
4
hdf5
Organism
109
Homo sapiens
Biosample type
76
tissue
33
primary cell
Organ
25
heart
18
brain
18
connective tissue
18
epithelium
17
pancreas
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
109
AMP
Genome assembly (visualization)
93
hg19
81
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
txt
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
109 results
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Clear Filters
total RNA-seq
small RNA-seq
RRBS
ATAC-seq
WGBS
ChIP-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
2
4
islet of Langerhans
1
6
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 23 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
+ See 21 more…
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