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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
2
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
15
DNA accessibility
2
3D chromatin structure
2
DNA binding
Target of assay
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
8
February, 2021
6
October, 2019
4
February, 2023
1
March, 2020
1
May, 2021
Available data
13
bam
11
bed narrowPeak
4
bed bed3
txt
3
bigBed narrowPeak
3
bigWig
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
20
Homo sapiens
Biosample type
12
tissue
8
primary cell
Organ
789
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
296
heart
262
kidney
165
vasculature
160
blood vessel
121
artery
99
brain
73
limb
71
bone element
68
blood
68
bodily fluid
62
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
12
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
19
AMP
1
T1D
Genome assembly (visualization)
17
hg19
10
GRCh38
Lab
19
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
files.file_type!
txt
target.investigated_as!
histone
BIOSAMPLE
ASSAY
20 results
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ATAC-seq
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 7 more…
primary cell
endothelial cell of umbilical vein
2
2
2
1
megakaryocyte
1
See all biosamples
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