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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
3
DNase-seq
2
Hi-C
2
WGBS
2
pCHi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
37
DNA binding
5
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
21
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
1
October, 2017
Available data
44
bam
31
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
24
fastq
5
bed broadPeak
5
bigBed broadPeak
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
48
Homo sapiens
Biosample type
26
tissue
22
primary cell
Organ
940
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
292
kidney
286
brain
236
vasculature
230
blood vessel
141
artery
122
limb
95
musculature of body
71
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
31
hg19
28
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
txt
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
DNase-seq
Hi-C
WGBS
pCHi-C
ATAC-seq
FAIRE-seq
tissue
spleen
20
1
2
1
1
bladder (urinary bladder)
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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