Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1400total RNA-seq
  • 353single cell RNA-seq
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5STARR-seq
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1771Transcription
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 560February, 2021
  • 182May, 2021
  • 168July, 2018
  • 145May, 2020
  • 128August, 2021
  • 90February, 2023
  • 89August, 2017
  • 56September, 2020
  • 54May, 2022
  • 49April, 2018
  • 49July, 2019
  • 47September, 2023
  • 27September, 2018
  • 26October, 2019
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 4May, 2023
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 1478tsv
  • 1335bam
  • 1331bigWig
  • 366fastq
  • txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1791Homo sapiens
Biosample type
  • 1160tissue
  • 374primary cell
  • 138in vitro differentiated cells
  • 119cell line
Organ
  • 483pancreas
  • 475connective tissue
  • 400adipose tissue
  • 203epithelium
  • 190liver
  • 162heart
  • 66kidney
  • 65blood vessel
  • 65vasculature
  • 58bone element
  • 56artery
  • 21brain
  • 19eye
  • 14embryo
  • 9lung
  • 8musculature of body
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1498AMP
  • 177HPAP
  • 60T1D
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 1332hg19
  • 1330GRCh38
Lab
  • 1446AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 64Kyle Gaulton, UCSD
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
  • 3Katalin Susztak, Upenn
Audit category:
  • 142inconsistent ontology term
  • 4audit script error
files.file_type!
  • txt
BIOSAMPLE
ASSAY

1791 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
MeRIP-seq
STARR-seq
snDrop-seq
RNA microarray
tissue
adipose tissue382
islet of Langerhans28664
liver16711
bone tissue58
kidney51
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte52
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1336
HepG292
H1-hESC8
HEK293T2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego