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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
18
ChIP-seq
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
18
DNA binding
7
DNA accessibility
Target of assay
18
control
5
RNA binding protein
transcription factor
Date released
386
February, 2021
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
420
bam
403
bigWig
401
tsv
21
fastq
5
bed narrowPeak
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
428
Homo sapiens
Biosample type
426
tissue
2
primary cell
1
in vitro differentiated cells
Organ
746
pancreas
553
connective tissue
486
epithelium
429
adipose tissue
402
liver
376
heart
344
kidney
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
70
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
429
AMP
Genome assembly (visualization)
406
hg19
403
GRCh38
Lab
429
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
vcf
month_released!
August, 2017
organ_slims!
brain
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
429 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
2
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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