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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
20
total RNA-seq
13
ChIP-seq
2
Hi-C
Assay category
27
DNA accessibility
20
Transcription
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
53
bam
38
bigWig
31
bed narrowPeak
20
tsv
7
fastq
2
bedpe bed3+
2
hic
Organism
62
Homo sapiens
Biosample type
39
tissue
16
cell line
7
primary cell
Organ
62
pancreas
23
epithelium
1
adipose tissue
1
connective tissue
Project
55
AMP
7
HPAP
Genome assembly (visualization)
58
GRCh38
53
hg19
Lab
55
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
16
inconsistent ontology term
files.file_type!
vcf
BIOSAMPLE
ASSAY
62 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
19
19
1
cell line
EndoC_BH1
1
1
13
1
primary cell
pancreatic alpha cell
5
pancreatic beta cell
2
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