Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
60
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
76
DNA binding
66
Transcription
51
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
RNA binding protein
Date released
66
February, 2021
47
May, 2019
35
February, 2023
26
October, 2019
8
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
151
bam
124
bigWig
109
bed narrowPeak
67
tsv
59
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
197
Homo sapiens
Biosample type
130
tissue
66
cell line
1
primary cell
Organ
937
pancreas
732
liver
674
connective tissue
epithelium
486
adipose tissue
382
heart
351
kidney
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
197
AMP
Genome assembly (visualization)
167
GRCh38
132
hg19
Lab
197
AMP-T2D consortium
files.file_type!
vcf
organ_slims!
epithelium
skeleton
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
197 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
4
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
15
2
1
thoracic aorta
15
2
1
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the coronary artery
1
See all biosamples
Download