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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
total RNA-seq
43
ChIP-seq
12
ATAC-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
43
DNA binding
18
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
715
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
314
October, 2019
255
August, 2021
205
February, 2023
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
May, 2022
61
November, 2019
59
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
123
tsv
106
bed narrowPeak
xls
57
txt
49
bam
47
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
254
Homo sapiens
Biosample type
165
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
92
heart
66
kidney
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
255
AMP
Genome assembly (visualization)
60
hg19
41
GRCh38
Lab
151
AMP-T2D consortium
64
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
xls
zippedFastqFolder
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
255 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
21
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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