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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
43
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
RNA binding protein
16
recombinant protein
7
chromatin remodeller
control
3
other context
3
other post-translational modification
Date released
712
February, 2021
385
May, 2021
353
August, 2017
318
May, 2020
298
November, 2017
275
October, 2019
242
August, 2021
206
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
92
May, 2019
73
September, 2018
69
December, 2017
64
March, 2020
62
April, 2019
61
November, 2018
59
September, 2020
58
November, 2019
49
April, 2018
47
September, 2023
36
October, 2018
35
May, 2024
31
February, 2018
29
December, 2018
25
February, 2020
20
January, 2019
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
10
December, 2019
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
61
fastq
60
bam
59
bigWig
52
bed narrowPeak
52
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
61
Homo sapiens
Biosample type
37
cell line
23
tissue
1
primary cell
Organ
34
liver
10
blood
10
bodily fluid
7
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
61
AMP
Genome assembly (visualization)
58
GRCh38
50
hg19
Lab
61
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
files.file_type!
xls
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
target.investigated_as!
RNA binding protein
control
BIOSAMPLE
ASSAY
61 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
26
1
GM12878
10
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
pancreatic cell
1
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