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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
15
total RNA-seq
4
ATAC-seq
3
single cell RNA-seq
1
Hi-C
1
pCHi-C
Assay category
24
DNA binding
18
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
255
August, 2021
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
44
fastq
43
bam
34
bigWig
18
tsv
16
bed narrowPeak
1
bed broadPeak
1
bedpe
1
bedpe bed3+
1
hic
Organism
48
Homo sapiens
Biosample type
40
in vitro differentiated cells
5
tissue
3
primary cell
Organ
13
embryo
8
pancreas
3
epithelium
1
adipose tissue
1
connective tissue
Project
48
AMP
Genome assembly (visualization)
37
hg19
36
GRCh38
Lab
43
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
2
inconsistent control read length
files.file_type!
xls
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
pCHi-C
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 3 more…
tissue
islet of Langerhans
4
1
primary cell
pancreatic alpha cell
2
pancreatic acinar cell
1
See all biosamples
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