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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
single cell RNA-seq
13
ChIP-seq
1
ATAC-seq
1
Hi-C
1
total RNA-seq
Assay category
34
Transcription
13
DNA binding
1
3D chromatin structure
1
DNA accessibility
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
48
bam
45
bigWig
34
tsv
33
fastq
12
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
49
Homo sapiens
Biosample type
33
primary cell
16
cell line
Organ
212
pancreas
49
epithelium
3
connective tissue
1
adipose tissue
Project
49
AMP
Genome assembly (visualization)
47
hg19
46
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
files.file_type!
xls
month_released!
August, 2017
BIOSAMPLE
ASSAY
49 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic ductal cell
3
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cell line
EndoC_BH1
13
1
1
1
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