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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
33
single cell RNA-seq
30
ATAC-seq
27
snATAC-seq
6
WGBS
3
Hi-C
Assay category
145
Transcription
57
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
76
February, 2023
45
February, 2021
40
May, 2022
40
September, 2020
7
August, 2020
3
October, 2022
Available data
169
fastq
zippedFastqFolder
30
bigWig
20
bed narrowPeak
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
211
Homo sapiens
Biosample type
171
primary cell
40
tissue
Organ
72
epithelium
72
pancreas
40
liver
Project
171
HPAP
40
AMP
Genome assembly (visualization)
23
hg19
10
GRCh38
Lab
3911
AMP-T2D consortium
342
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
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files.file_type!
zippedFastqFolder
organ_slims!
thymus
organ_slims!!
thymus
BIOSAMPLE
ASSAY
211 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
tissue
liver
20
20
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