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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
14
total RNA-seq
Assay category
14
DNA binding
14
Transcription
Target of assay
12
histone
12
histone modification
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
8
December, 2017
2
May, 2021
January, 2018
Available data
28
bam
21
bigWig
18
fastq
14
tsv
7
bed narrowPeak
2
bed bed3+
Organism
28
Homo sapiens
Biosample type
20
in vitro differentiated cells
8
cell line
Organ
790
pancreas
731
liver
649
connective tissue
477
adipose tissue
392
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
82
musculature of body
67
blood
67
bodily fluid
58
eye
35
nerve
28
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
22
GRCh38
22
hg19
Lab
28
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
zippedFastqFolder
month_released!
August, 2018
January, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
28 results
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Clear Filters
ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
12
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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