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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
29
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
49
DNA accessibility
29
DNA binding
Target of assay
18
histone
18
histone modification
14
broad histone mark
7
control
4
narrow histone mark
4
transcription factor
Date released
66
February, 2021
35
February, 2023
26
October, 2019
May, 2019
3
July, 2019
2
August, 2021
February, 2020
2
June, 2019
Available data
97
bam
82
bigWig
71
bed narrowPeak
56
tsv
22
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
134
Homo sapiens
Biosample type
66
cell line
66
tissue
2
primary cell
Organ
863
pancreas
790
liver
682
connective tissue
489
adipose tissue
439
epithelium
369
heart
349
kidney
246
brain
183
vasculature
177
blood vessel
159
bone element
134
artery
112
limb
87
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
125
GRCh38
90
hg19
Lab
134
AMP-T2D consortium
files.file_type!
zippedFastqFolder
month_released!
February, 2020
May, 2019
BIOSAMPLE
ASSAY
134 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
36
2
tibial artery
1
23
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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