Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
RRBS
4
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
32
DNA binding
7
Transcription
5
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
26
August, 2017
11
June, 2019
5
July, 2019
5
March, 2020
2
May, 2022
February, 2020
1
January, 2018
Available data
29
bigWig
22
bed narrowPeak
17
bam
15
tagAlign
14
bed broadPeak
9
bigBed narrowPeak
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
50
Homo sapiens
Biosample type
36
tissue
14
primary cell
Organ
865
pancreas
790
liver
682
connective tissue
489
adipose tissue
444
epithelium
390
heart
354
kidney
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
35
hg19
15
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
zippedFastqFolder
month_released!
February, 2020
organ_slims!
limb
BIOSAMPLE
ASSAY
50 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
RRBS
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
psoas muscle
2
2
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
Download