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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
DNase-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
212
DNA binding
24
Transcription
6
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
85
November, 2017
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
February, 2023
Available data
207
bam
185
bigWig
169
bed narrowPeak
118
tagAlign
93
bigBed narrowPeak
26
tsv
15
fastq
13
bed broadPeak
4
bed bed3+
4
bigBed broadPeak
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
247
Homo sapiens
Biosample type
239
tissue
8
primary cell
Organ
806
pancreas
789
liver
652
connective tissue
489
adipose tissue
372
epithelium
322
heart
273
kidney
255
brain
vasculature
190
blood vessel
151
bone element
104
artery
90
limb
69
blood
69
bodily fluid
53
musculature of body
43
nerve
37
embryo
25
spleen
23
eye
22
vein
20
lung
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
247
AMP
Genome assembly (visualization)
183
GRCh38
135
hg19
Lab
247
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
zippedFastqFolder
month_released!
February, 2023
June, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
247 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
1
2
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
See all biosamples
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