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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
single cell RNA-seq
51
total RNA-seq
50
ATAC-seq
43
ChIP-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
1
snATAC-seq
1
whole genome sequencing assay
Assay category
150
Transcription
51
DNA accessibility
43
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
707
February, 2021
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
66
May, 2022
62
March, 2020
61
November, 2019
57
April, 2019
49
April, 2018
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
zippedFastqFolder
123
tsv
80
bed narrowPeak
73
bam
67
bigWig
24
fastq
24
tagAlign
7
txt
6
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
254
Homo sapiens
Biosample type
167
tissue
42
cell line
42
in vitro differentiated cells
4
primary cell
Organ
kidney
92
heart
75
liver
28
pancreas
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
2
artery
2
musculature of body
1
adipose tissue
Project
255
AMP
Genome assembly (visualization)
98
hg19
41
GRCh38
Lab
153
AMP-T2D consortium
40
Karen Mohlke, UNC
34
Bing Ren, UCSD
24
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
files.file_type!
zippedFastqFolder
month_released!
August, 2017
organ_slims!
kidney
BIOSAMPLE
ASSAY
255 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
snATAC-seq
whole genome sequencing assay
tissue
liver
20
20
islet of Langerhans
7
18
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
10
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
See all biosamples
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