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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
23
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
174
Transcription
82
DNA accessibility
23
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
649
February, 2021
316
November, 2017
314
May, 2020
293
August, 2021
259
May, 2021
213
August, 2017
194
June, 2019
170
February, 2023
168
July, 2018
104
October, 2019
97
July, 2019
88
November, 2018
66
May, 2022
63
December, 2017
57
March, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
40
September, 2020
35
December, 2018
23
February, 2018
23
January, 2019
22
February, 2020
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
14
May, 2019
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
117
tsv
87
bed narrowPeak
64
xls
57
txt
33
bam
28
bigWig
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
292
Homo sapiens
Biosample type
223
tissue
41
cell line
28
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
29
liver
8
embryo
blood vessel
6
vasculature
5
connective tissue
4
pancreas
3
epithelium
2
artery
1
adipose tissue
Project
293
AMP
Genome assembly (visualization)
89
GRCh38
42
hg19
Lab
128
AMP-T2D consortium
128
Katalin Susztak, Upenn
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
zippedFastqFolder
organ_slims!
blood vessel
target.investigated_as!
histone
BIOSAMPLE
ASSAY
293 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 9 more…
cell line
HepG2
9
15
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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