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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
44
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
1
snATAC-seq
Assay category
92
Transcription
47
DNA accessibility
27
DNA methylation
8
3D chromatin structure
Target of assay
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
October, 2017
19
April, 2020
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
zippedFastqFolder
106
bam
105
bigWig
65
tsv
45
bed narrowPeak
24
fastq
23
bed bedMethyl
23
bigBed bedMethyl
7
txt
5
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
174
Homo sapiens
Biosample type
143
tissue
31
primary cell
Organ
50
liver
30
pancreas
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
musculature of body
12
vasculature
11
blood vessel
11
kidney
5
limb
3
artery
2
pericardium
1
eye
Project
174
AMP
Genome assembly (visualization)
130
hg19
79
GRCh38
Lab
110
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
zippedFastqFolder
month_released!
January, 2021
October, 2017
BIOSAMPLE
ASSAY
174 results
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Clear Filters
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
liver
22
20
1
islet of Langerhans
6
18
1
heart left ventricle
2
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 26 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 20 more…
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