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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
50
ChIP-seq
3
single cell RNA-seq
1
pCHi-C
Assay category
193
Transcription
100
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
715
February, 2021
396
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
317
August, 2021
314
October, 2019
214
June, 2019
204
February, 2023
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
66
May, 2022
65
October, 2018
64
March, 2020
60
November, 2019
49
April, 2018
47
September, 2023
40
September, 2020
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
286
bam
263
bigWig
192
tsv
50
tagAlign
27
bed narrowPeak
3
fastq
Organism
344
Homo sapiens
Biosample type
193
tissue
150
primary cell
1
cell line
Organ
194
liver
1
epithelium
1
pancreas
Project
299
AMP
45
T1D
Genome assembly (visualization)
263
hg19
210
GRCh38
Lab
299
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
files.file_type!
zippedFastqFolder
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
344 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
cell line
HepG2
1
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