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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
26
ATAC-seq
22
total RNA-seq
2
Hi-C
Assay category
56
DNA binding
26
DNA accessibility
22
Transcription
2
3D chromatin structure
Target of assay
40
histone
40
histone modification
control
25
broad histone mark
16
transcription factor
15
narrow histone mark
12
RNA binding protein
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
205
February, 2023
192
June, 2019
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
66
May, 2022
64
March, 2020
59
November, 2019
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
40
September, 2020
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
104
bam
82
bed narrowPeak
78
bigWig
45
bigBed narrowPeak
33
fastq
22
tsv
2
bedpe bed3+
2
hic
Organism
106
Homo sapiens
Biosample type
85
tissue
14
cell line
5
in vitro differentiated cells
2
primary cell
Organ
95
pancreas
16
epithelium
6
adipose tissue
6
connective tissue
Project
106
AMP
Genome assembly (visualization)
106
hg19
104
GRCh38
Lab
106
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
1
inconsistent control read length
files.file_type!
zippedFastqFolder
organ_slims!
ureter
target.investigated_as!
control
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
body of pancreas
25
endocrine pancreas
14
omental fat pad
3
subcutaneous adipose tissue
2
+ See 2 more…
cell line
EndoC_BH1
11
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic acinar cell
2
See all biosamples
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