Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
Assay category
95
DNA binding
Target of assay
827
histone modification
826
histone
488
transcription factor
425
narrow histone mark
400
broad histone mark
293
control
95
RNA binding protein
89
recombinant protein
35
chromatin remodeller
other context
5
other post-translational modification
2
nucleotide modification
Date released
35
November, 2017
21
November, 2018
11
October, 2018
8
August, 2017
6
January, 2019
5
May, 2021
2
December, 2017
2
December, 2018
2
May, 2019
1
April, 2019
1
August, 2021
1
June, 2019
Available data
89
bam
87
bigWig
86
bed narrowPeak
85
fastq
80
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
2
bed bed3+
1
tar
Organism
95
Homo sapiens
Biosample type
64
cell line
18
tissue
9
in vitro differentiated cells
4
primary cell
Organ
58
liver
heart
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
95
AMP
Genome assembly (visualization)
86
hg19
81
GRCh38
Lab
89
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
files.file_type!
zippedFastqFolder
organ_slims!
epithelium
heart
target.investigated_as!
other context
BIOSAMPLE
ASSAY
95 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
tissue
body of pancreas
5
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
ascending aorta
1
+ See 5 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
cardiac muscle cell
1
See all biosamples
Download