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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
504
ChIP-seq
159
total RNA-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
504
DNA binding
162
Transcription
3
DNA accessibility
1
DNA methylation
Target of assay
324
transcription factor
100
control
82
recombinant protein
77
histone modification
76
histone
57
RNA binding protein
48
narrow histone mark
28
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
63
December, 2017
50
November, 2018
23
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
1
August, 2021
1
February, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
670
Homo sapiens
Biosample type
366
cell line
282
tissue
15
in vitro differentiated cells
7
primary cell
Organ
670
liver
661
pancreas
573
connective tissue
436
adipose tissue
298
epithelium
211
brain
181
heart
174
vasculature
171
blood vessel
98
artery
78
limb
66
bone element
66
kidney
60
blood
60
bodily fluid
40
nerve
33
embryo
24
musculature of body
23
spleen
18
vein
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
670
AMP
Genome assembly (visualization)
574
hg19
520
GRCh38
Lab
670
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
adrenal gland
lung
BIOSAMPLE
ASSAY
670 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
359
5
1
1
tissue
liver
119
147
1
right lobe of liver
10
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
5
Liver fetal (hepatocyte)
1
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