Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1525ChIP-seq
  • 1282total RNA-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5DNase-seq
  • 5FAIRE-seq
Assay category
  • 1525DNA binding
  • 1406Transcription
  • 185DNA accessibility
  • 18DNA methylation
Target of assay
  • 760histone modification
  • 759histone
  • 466transcription factor
  • 392narrow histone mark
  • 366broad histone mark
  • 297control
  • 101RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 571February, 2021
  • 392November, 2017
  • 283May, 2020
  • 277May, 2021
  • 249August, 2017
  • 243October, 2019
  • 164July, 2018
  • 120May, 2019
  • 82July, 2019
  • 79April, 2019
  • 79December, 2017
  • 78November, 2018
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 46August, 2021
  • 39February, 2018
  • 34December, 2018
  • 31June, 2019
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 9September, 2017
  • 5December, 2019
  • 5November, 2020
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3127Homo sapiens
Biosample type
  • 1703tissue
  • 581cell line
  • 578primary cell
  • 272in vitro differentiated cells
Organ
  • 670liver
  • 661pancreas
  • 573connective tissue
  • 436adipose tissue
  • 298epithelium
  • 211brain
  • 181heart
  • 174vasculature
  • 171blood vessel
  • 98artery
  • 78limb
  • 66bone element
  • 66kidney
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 33embryo
  • 24musculature of body
  • 23spleen
  • 18vein
  • 8skeleton
  • 3eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2948AMP
  • 186T1D
Genome assembly (visualization)
  • 2763hg19
  • 2702GRCh38
Lab
  • 2929AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 208inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 74missing controlled_by
Audit category:
  • 46inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

3134 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
DNase-seq
FAIRE-seq
tissue
adipose tissue23812
islet of Langerhans926638611
liver1191471
bone tissue58
body of pancreas352422
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc113
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
cardiomyocytes359
adipocyte4641
neural progenitor cell20710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm154
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego