Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
58
total RNA-seq
38
DNase-seq
17
ATAC-seq
1
WGBS
Assay category
76
DNA binding
58
Transcription
55
DNA accessibility
1
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
21
control
16
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
72
February, 2021
68
October, 2019
34
June, 2019
12
May, 2019
4
July, 2019
Available data
190
bam
155
bigWig
145
bed narrowPeak
89
bigBed narrowPeak
64
tsv
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
190
Homo sapiens
Biosample type
122
tissue
66
cell line
2
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
190
AMP
Genome assembly (visualization)
168
GRCh38
168
hg19
Lab
190
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedgraph
bedpe bed3+
BIOSAMPLE
ASSAY
190 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
tissue
tibial nerve
35
4
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
coronary artery
5
2
1
+ See 8 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
Download