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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
20
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
398
Transcription
20
DNA binding
3
DNA accessibility
2
DNA methylation
Target of assay
19
control
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
18
October, 2018
12
July, 2019
5
August, 2017
1
November, 2019
1
October, 2017
Available data
425
bam
408
bigWig
401
tsv
27
fastq
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
423
Homo sapiens
Biosample type
421
tissue
2
primary cell
Organ
656
pancreas
544
connective tissue
423
adipose tissue
336
liver
288
epithelium
197
brain
161
vasculature
160
blood vessel
118
heart
93
artery
78
limb
66
bone element
40
nerve
34
kidney
33
embryo
24
musculature of body
17
spleen
16
vein
9
blood
9
bodily fluid
8
skeleton
2
eye
1
pericardium
1
pituitary gland
Project
423
AMP
Genome assembly (visualization)
404
GRCh38
402
hg19
Lab
423
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed broadPeak
month_released!
April, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
423 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
2
2
subcutaneous adipose tissue
6
10
1
1
omental fat pad
4
8
1
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
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