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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ChIP-seq
159
total RNA-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
452
DNA binding
162
Transcription
3
DNA accessibility
1
DNA methylation
Target of assay
282
transcription factor
101
control
82
recombinant protein
66
histone modification
65
histone
53
RNA binding protein
44
narrow histone mark
21
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
256
November, 2017
193
May, 2020
63
December, 2017
50
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
1
February, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
618
Homo sapiens
Biosample type
308
cell line
285
tissue
15
in vitro differentiated cells
10
primary cell
Organ
675
pancreas
618
liver
584
connective tissue
440
adipose tissue
295
epithelium
197
brain
181
heart
168
vasculature
167
blood vessel
98
artery
78
limb
bone element
66
kidney
60
blood
60
bodily fluid
40
nerve
36
embryo
24
musculature of body
23
spleen
16
vein
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
618
AMP
Genome assembly (visualization)
522
hg19
482
GRCh38
Lab
618
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
January, 2018
organ_slims!
bone element
BIOSAMPLE
ASSAY
618 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
301
5
1
1
tissue
liver
122
147
1
right lobe of liver
10
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
Liver fetal (hepatocyte)
1
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