Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
63
ChIP-seq
20
ATAC-seq
18
small RNA-seq
9
WGBS
3
single cell RNA-seq
2
FAIRE-seq
Assay category
91
Transcription
63
DNA binding
22
DNA accessibility
9
DNA methylation
Target of assay
51
histone
51
histone modification
26
narrow histone mark
25
broad histone mark
11
control
4
RNA binding protein
4
transcription factor
Date released
572
February, 2021
323
November, 2017
283
May, 2020
277
May, 2021
261
August, 2017
241
October, 2019
164
July, 2018
120
May, 2019
94
December, 2017
82
July, 2019
79
April, 2019
78
November, 2018
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
31
June, 2019
30
January, 2019
24
May, 2022
16
March, 2020
12
October, 2017
11
September, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
Available data
372
bam
367
bigWig
263
bed narrowPeak
226
bigBed narrowPeak
191
bed bed3+
bed broadPeak
187
bigBed broadPeak
91
tsv
73
fastq
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
1
csv
Organism
185
Homo sapiens
Biosample type
121
primary cell
64
tissue
Organ
76
pancreas
72
epithelium
28
connective tissue
26
heart
15
musculature of body
13
brain
12
adipose tissue
10
kidney
9
blood vessel
9
vasculature
7
liver
3
artery
3
eye
1
limb
1
pericardium
Project
185
AMP
Genome assembly (visualization)
174
GRCh38
167
hg19
Lab
185
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
32
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
185 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 20 more…
tissue
heart left ventricle
2
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart
2
1
1
+ See 21 more…
See all biosamples
Download