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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
Assay category
31
DNA binding
Target of assay
586
histone modification
585
histone
436
transcription factor
297
broad histone mark
287
narrow histone mark
276
control
94
RNA binding protein
89
recombinant protein
31
chromatin remodeller
4
other context
4
other post-translational modification
Date released
11
November, 2017
7
November, 2018
6
January, 2019
3
December, 2017
2
August, 2017
2
December, 2018
Available data
36
bam
36
bed narrowPeak
36
bigWig
36
fastq
34
bigBed narrowPeak
bed broadPeak
5
bigBed broadPeak
Organism
31
Homo sapiens
Biosample type
26
cell line
3
in vitro differentiated cells
2
tissue
Organ
19
liver
10
blood
10
bodily fluid
2
connective tissue
1
epithelium
Project
31
AMP
Genome assembly (visualization)
31
hg19
29
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
organ_slims!
brain
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
cell line
HepG2
16
GM12878
10
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
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