Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1485ChIP-seq
  • 1282total RNA-seq
  • 174ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 3DNase-seq
  • 1pCHi-C
Assay category
  • 1485DNA binding
  • 1406Transcription
  • 182DNA accessibility
  • 18DNA methylation
Target of assay
  • 741histone modification
  • 740histone
  • 436transcription factor
  • 385narrow histone mark
  • 354broad histone mark
  • 306control
  • 94RNA binding protein
  • 89recombinant protein
  • 31chromatin remodeller
  • 4other context
  • 4other post-translational modification
Date released
  • 572February, 2021
  • 323November, 2017
  • 283May, 2020
  • 277May, 2021
  • 261August, 2017
  • 241October, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 82July, 2019
  • 79April, 2019
  • 78November, 2018
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 31June, 2019
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 12October, 2017
  • 11September, 2017
  • 5December, 2019
  • 5November, 2020
  • 3August, 2018
  • 3June, 2018
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3091Homo sapiens
Biosample type
  • 1716tissue
  • 560primary cell
  • 523cell line
  • 290in vitro differentiated cells
  • 3stem cell
Organ
  • 675pancreas
  • 618liver
  • 584connective tissue
  • 440adipose tissue
  • 295epithelium
  • 197brain
  • 181heart
  • 168vasculature
  • 167blood vessel
  • 98artery
  • 78limb
  • 66bone element
  • 66kidney
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 36embryo
  • 24musculature of body
  • 23spleen
  • 16vein
  • 8skeleton
  • 3eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2906AMP
  • 186T1D
Genome assembly (visualization)
  • 2722hg19
  • 2678GRCh38
Lab
  • 2888AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
Audit category:
  • 208inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 86missing controlled_by
Audit category:
  • 43inconsistent control read length
  • 9inconsistent control run_type
  • 1inconsistent assembly
files.file_type!
  • bed broadPeak
BIOSAMPLE
ASSAY

3092 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
DNase-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans3026637611
liver1221471
bone tissue58
body of pancreas352422
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2301511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc113
in vitro differentiated cells
cardiomyocytes359
adipocyte534
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego