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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
total RNA-seq
111
ChIP-seq
3
small RNA-seq
1
WGBS
Assay category
162
Transcription
111
DNA binding
1
DNA methylation
Target of assay
101
control
8
transcription factor
2
RNA binding protein
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
166
May, 2020
65
November, 2017
13
December, 2017
8
August, 2017
7
July, 2019
5
December, 2019
5
January, 2019
2
November, 2018
1
August, 2021
1
March, 2020
1
October, 2019
Available data
681
bam
622
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
csv
1
hdf5
1
vcf
Organism
274
Homo sapiens
Biosample type
195
tissue
72
cell line
6
primary cell
1
in vitro differentiated cells
Organ
522
connective tissue
481
pancreas
431
adipose tissue
274
liver
178
epithelium
96
heart
87
vasculature
86
blood vessel
63
artery
58
bone element
brain
25
kidney
22
embryo
22
limb
15
nerve
10
musculature of body
10
spleen
7
vein
6
blood
6
bodily fluid
1
eye
1
pericardium
Project
274
AMP
Genome assembly (visualization)
182
hg19
164
GRCh38
Lab
274
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
csv
organ_slims!
brain
BIOSAMPLE
ASSAY
274 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
WGBS
tissue
liver
147
40
1
right lobe of liver
2
3
2
cell line
HepG2
5
66
1
primary cell
hepatocyte
5
1
in vitro differentiated cells
hepatocyte
1
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