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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1282total RNA-seq
  • 359ChIP-seq
  • 106single cell RNA-seq
  • 48ATAC-seq
  • 18WGBS
  • 18small RNA-seq
  • 1pCHi-C
Assay category
  • 1406Transcription
  • 359DNA binding
  • 48DNA accessibility
  • 18DNA methylation
Target of assay
  • 306control
  • 32transcription factor
  • 24histone
  • 24histone modification
  • 13narrow histone mark
  • 11broad histone mark
  • 4RNA binding protein
  • 1recombinant protein
Date released
  • 549February, 2021
  • 256May, 2020
  • 174May, 2021
  • 164July, 2018
  • 160August, 2017
  • 80November, 2017
  • 75July, 2019
  • 61October, 2019
  • 49April, 2018
  • 31October, 2018
  • 26September, 2018
  • 23August, 2021
  • 23February, 2018
  • 23May, 2019
  • 22December, 2017
  • 22November, 2019
  • 15April, 2019
  • 14November, 2018
  • 13March, 2020
  • 9January, 2019
  • 8June, 2019
  • 6May, 2022
  • 6September, 2017
  • 5December, 2019
  • 4December, 2018
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 3October, 2017
  • 1March, 2019
Available data
  • 3392bam
  • 3169bigWig
  • bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1831Homo sapiens
Biosample type
  • 1132tissue
  • 344primary cell
  • 192cell line
  • 163in vitro differentiated cells
  • 1stem cell
Organ
  • 522connective tissue
  • 481pancreas
  • 431adipose tissue
  • 274liver
  • 178epithelium
  • 96heart
  • 87vasculature
  • 86blood vessel
  • 63artery
  • 58bone element
  • 41brain
  • 25kidney
  • 22embryo
  • 22limb
  • 15nerve
  • 10musculature of body
  • 10spleen
  • 7vein
  • 6blood
  • 6bodily fluid
  • 1eye
  • 1pericardium
Project
  • 1734AMP
  • 98T1D
Genome assembly (visualization)
  • 1518hg19
  • 1466GRCh38
Lab
  • 1729AMP-T2D consortium
  • 102Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 150inconsistent ontology term
Audit category:
  • 40missing controlled_by
Audit category:
  • 2inconsistent control read length
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

1832 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
tissue
adipose tissue38112
islet of Langerhans2661661
liver147401
bone tissue58
subcutaneous adipose tissue6101
primary cell
monocyte532
pancreatic alpha cell10612
pancreatic beta cell10612
pancreatic acinar cell412
pancreatic ductal cell410
cell line
HepG25661
smooth muscle cell of the coronary artery522
EndoC_BH1332
H1-hESC8
Panc17
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
adipocyte411
neural progenitor cell77
pancreatic endoderm46
stem cell
hESC1
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