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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
491
ChIP-seq
149
total RNA-seq
4
DNase-seq
3
small RNA-seq
2
ATAC-seq
1
WGBS
Assay category
491
DNA binding
152
Transcription
6
DNA accessibility
1
DNA methylation
Target of assay
324
transcription factor
99
control
82
recombinant protein
65
histone modification
64
histone
55
RNA binding protein
43
narrow histone mark
22
chromatin remodeller
21
broad histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
53
November, 2018
48
December, 2017
26
August, 2017
7
July, 2019
6
October, 2019
January, 2019
1
February, 2021
1
June, 2019
1
March, 2020
Available data
650
bam
593
bigWig
445
fastq
422
bed narrowPeak
343
bigBed narrowPeak
164
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
650
Homo sapiens
Biosample type
361
cell line
288
tissue
1
primary cell
Organ
689
pancreas
676
liver
593
connective tissue
442
adipose tissue
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
57
musculature of body
42
blood
42
bodily fluid
42
nerve
36
embryo
20
vein
18
ureter
17
spleen
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
650
AMP
Genome assembly (visualization)
556
hg19
502
GRCh38
Lab
650
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bedpe bed3+
month_released!
January, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
650 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
ATAC-seq
WGBS
cell line
HepG2
359
1
1
tissue
liver
122
147
2
1
right lobe of liver
10
2
1
2
1
primary cell
hepatic stellate cell
1
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