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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
57
total RNA-seq
11
ATAC-seq
2
WGBS
Assay category
79
DNA binding
57
Transcription
11
DNA accessibility
2
DNA methylation
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
24
October, 2019
8
July, 2019
1
March, 2020
Available data
154
bam
127
bigWig
112
bed narrowPeak
67
tsv
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
149
Homo sapiens
Biosample type
82
tissue
66
cell line
1
primary cell
Organ
677
pancreas
584
connective tissue
568
liver
440
adipose tissue
epithelium
205
brain
181
heart
168
vasculature
167
blood vessel
98
artery
78
limb
66
bone element
66
kidney
45
blood
45
bodily fluid
40
nerve
36
embryo
24
musculature of body
16
vein
15
spleen
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
149
AMP
Genome assembly (visualization)
130
GRCh38
129
hg19
Lab
149
AMP-T2D consortium
files.file_type!
bigBed broadPeak
month_released!
November, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
149 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
tissue
tibial artery
23
1
thoracic aorta
16
2
1
ascending aorta
16
1
aorta
13
1
2
coronary artery
5
1
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the coronary artery
1
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