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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
total RNA-seq
29
ChIP-seq
11
ATAC-seq
2
WGBS
Assay category
58
Transcription
29
DNA binding
11
DNA accessibility
2
DNA methylation
Target of assay
20
control
5
histone
5
histone modification
4
broad histone mark
4
transcription factor
1
narrow histone mark
Date released
66
February, 2021
13
October, 2019
11
May, 2019
9
July, 2019
1
March, 2020
Available data
176
bam
145
bigWig
126
bed narrowPeak
bigBed narrowPeak
68
tsv
10
bed broadPeak
10
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tar
Organism
100
Homo sapiens
Biosample type
66
cell line
25
tissue
9
primary cell
Organ
598
pancreas
568
connective tissue
433
adipose tissue
323
liver
241
epithelium
117
heart
brain
102
vasculature
101
blood vessel
77
artery
66
bone element
40
kidney
36
embryo
30
limb
16
nerve
11
spleen
10
musculature of body
8
skeleton
7
vein
6
blood
6
bodily fluid
1
eye
1
pericardium
1
pituitary gland
Project
100
AMP
Genome assembly (visualization)
75
hg19
74
GRCh38
Lab
100
AMP-T2D consortium
files.file_type!
bigBed narrowPeak
organ_slims!
brain
BIOSAMPLE
ASSAY
100 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
cell line
smooth muscle cell of the coronary artery
52
6
8
tissue
thoracic aorta
2
4
1
tibial artery
5
1
aorta
1
2
2
ascending aorta
1
3
coronary artery
2
1
primary cell
endothelial cell of umbilical vein
7
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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