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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1282total RNA-seq
  • 777ChIP-seq
  • 151ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 1pCHi-C
Assay category
  • 1406Transcription
  • 777DNA binding
  • 151DNA accessibility
  • 18DNA methylation
Target of assay
  • 394histone modification
  • 393histone
  • 306control
  • 256narrow histone mark
  • 136broad histone mark
  • 80transcription factor
  • 10RNA binding protein
  • 8recombinant protein
  • 2chromatin remodeller
Date released
  • 572February, 2021
  • 283May, 2020
  • 277May, 2021
  • 240August, 2017
  • 183October, 2019
  • 164July, 2018
  • 80July, 2019
  • 80November, 2017
  • 59November, 2019
  • 58September, 2018
  • 49April, 2018
  • 49August, 2021
  • 44December, 2017
  • 39February, 2018
  • 31October, 2018
  • 24May, 2022
  • 23May, 2019
  • 16March, 2020
  • 15April, 2019
  • 14November, 2018
  • 9January, 2019
  • 9October, 2017
  • 8June, 2019
  • 6September, 2017
  • 5December, 2019
  • 5November, 2020
  • 4December, 2018
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2352Homo sapiens
Biosample type
  • 1347tissue
  • 500primary cell
  • 276in vitro differentiated cells
  • 227cell line
  • 3stem cell
Organ
  • 598pancreas
  • 568connective tissue
  • 433adipose tissue
  • 323liver
  • 241epithelium
  • 117heart
  • 116brain
  • 102vasculature
  • 101blood vessel
  • 77artery
  • 66bone element
  • 40kidney
  • 36embryo
  • 30limb
  • 16nerve
  • 11spleen
  • 10musculature of body
  • 8skeleton
  • 7vein
  • 6blood
  • 6bodily fluid
  • 1eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2167AMP
  • 186T1D
Genome assembly (visualization)
  • 2038hg19
  • 1961GRCh38
Lab
  • 2148AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 188inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 73missing controlled_by
Audit category:
  • 25inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

2353 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
pCHi-C
tissue
adipose tissue38112
islet of Langerhans26630386
liver147841
bone tissue58
body of pancreas29422
primary cell
monocyte538415
pancreatic alpha cell101312
pancreatic beta cell101312
pancreatic ductal cell41310
pancreatic acinar cell4812
in vitro differentiated cells
cardiomyocytes593
adipocyte453
neural progenitor cell72010
pancreatic endoderm418
cardiac precursors (cardiac muscle cell)191
cell line
HepG256611
smooth muscle cell of the coronary artery5268
EndoC_BH133151
H1-hESC8
Panc17
stem cell
hESC3
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